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Species belonging to selected taxon:

Coffea canephora, Catharanthus roseus



ABOUT THIS RECORD

ID: MNEST045539
species: Catharanthus roseus
source: microPC, original name: miR169

Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCCGA

miRNA*
GGCAAGTTGTCTTTGGCT

mismatches: 2
bulges: 0

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pre-miRNA
AGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATACG
AACTCCTCGGCAAGTTGTCTTTGGCT


dot-bracket secondary structure
(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....))))
.))...)))))))))..)))))))))



SIMILARITIES
miRBase vvi-MIR169g: 0.00002

PMRD vvi-miR169g: 0.00002

microPC miR169: 6e-37
UniProt no hits

RFAM MIR169_2: 0.0001

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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