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Species belonging to selected taxon:

Coffea canephora, Catharanthus roseus



ABOUT THIS RECORD

ID: MNEST000473
species: Coffea canephora
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATCA

miRNA*
AAGAAGGTTGATGATGATGGCG

mismatches: 3
bulges: 1

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pre-miRNA
TGCTGCTCCTGCTGCTGCTGATCATCATCATCATCATCATCATGAGAAGAAGGTTGATGATGATGGCGGCTTCGGTATTATTTATG

dot-bracket secondary structure
.........(((((..((((.((((((((((((((.((.((....)).)).)).))))))))))))))))..))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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