miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST032223
species: Mus musculus
miRNA family: mir-599
source: miRBase, original name: mmu-mir-599 (MI0012529)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGTGTCAGTTTATCAAAC

miRNA*
TTGATAAGATGACATAGGA

mismatches: 2
bulges: 0

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pre-miRNA
TGCTGTCCACAGTGTATTTGATAAGATGACATAGGAGAGGAACTTCTTTCACCTTTGTGTCAGTTTATCAAACCCATACCTGGATGAC

dot-bracket secondary structure
....(((((..(((..(((((((((.((((((((((((((....))))))....)))))))).)))))))))..)))...)))))...


SIMILARITIES
miRBase cfa-mir-599: 5e-21

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-599: 1e-43

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"




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