miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST005097
species: Mus musculus
miRNA family: miR-4328
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCAGTTTTCCCAGGAATCCCT

miRNA*
GGATTCCTGGAAATACTGTTC

mismatches: 3
bulges: 0

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pre-miRNA
CTCCCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTGGATGCTAAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTAGC

dot-bracket secondary structure
......((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).)))).)).))))).)).))......


SIMILARITIES
miRBase rno-mir-145: 7e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-145: 8e-36
most similar mature miRNAs

Identical with: mmu-mir-145 from miRBase (MNEST031878)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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