miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST032650
species: Rattus norvegicus
miRNA family: mir-7
source: miRBase, original name: rno-mir-7a-2 (MI0000836)

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAAGACTAGTGATTTTGTTGT

miRNA*
AACAAGTCCCAGTCTGCCACA

mismatches: 2
bulges: 2

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pre-miRNA
GGACAGACCAGCCCTGTCTGGAAGACTAGTGATTTTGTTGTTGTGTCTGTGTCCAACAACAAGTCCCAGTCTGCCACATGGTGTTGGTCACATCA

dot-bracket secondary structure
.....(((((((.((((.(((.(((((.(.(((((.(((((((.(.......)))))))))))))).))))).))).)))).)))))))......


SIMILARITIES
miRBase mmu-mir-7a-2: 6e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-7: 1e-25

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD

references

[1] Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR, Genome Biol. 5:R68(2004)., "Microarray analysis of microRNA expression in the developing mammalian brain"
[2] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
[3] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"




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