miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccoglossus kowalevskii



ABOUT THIS RECORD

ID: MNEST034871
species: Saccoglossus kowalevskii
miRNA family: mir-71
source: miRBase, original name: sko-mir-71 (MI0010155)

Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAAGACACAGGTAGTGAGAT

miRNA*
CTCGCTACTTTGGTCTCTCTCC

mismatches: 4
bulges: 0

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pre-miRNA
GCATTACTGGTGGGTGTTTTGTGAAAGACACAGGTAGTGAGATAGTGTATGGTAAACATCTCGCTACTTTGGTCTCTCTCCATAGCACCTTGCCAAAATC
T


dot-bracket secondary structure
.......(((((((((((.((.((.((((..((((((((((((.((.........))))))))))))))..)))).))..)).)))))).))))).....
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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