miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Nilaparvata lugens, Myzus persicae, Peregrinus maidis, Rhodnius prolixus



ABOUT THIS RECORD

ID: MNEST008897
species: Aphis gossypii
miRNA family: miR-1609
source: miRNEST

Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGCTGAGGCTGTGGTGGTTG

miRNA*
CTACCGGCACGGCCCTGAATGAA

mismatches: 5
bulges: 0

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pre-miRNA
TCCGACGACTGCTCTACCGGCACGGCCCTGAATGAACCGGACACCGGAGGAATCGCCTTGTTCGGACGTGTTGCCGTAGTCGACGGACGGTGAGAAGGTG
CTGACTGTTGTGGTCGGACCACAGGCTGTGCGGTCCATTCACCGTCATCGAAATCGGAAGCGACCGATATCGGCTGAGGCTGTGGTGGTTGTTGTTGTTG
T


dot-bracket secondary structure
..(((((((.((...((((.(((((((.((..(((.((((...))))(((.....)))...((((.(((....(((...((((..(((((((((..((.(
(((((..(((((((...)))))))...)).)))))).))))))))).))))...)))..))).))))..)))..)).))))))).)))).)).)))))))
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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