miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acropora millepora, Nematostella vectensis, Acropora palmata, Anemonia viridis, Montastraea faveolata, Metridium senile, Porites astreoides, Aiptasia pallida



ABOUT THIS RECORD

ID: MNEST009179
species: Acropora palmata
miRNA family: miR-3533
source: miRNEST

Taxonomy by NCBI:
Acropora palmata Acropora Acroporidae Astrocoeniina Scleractinia Hexacorallia Anthozoa Cnidaria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTGATGTTGACATC

miRNA*
TGCCAACACTGTGCTTTCTGG

mismatches: 4
bulges: 0

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pre-miRNA
GAAACCACCTACAATTCCATCATGAAGTGTGATGTTGACATCCGTAAAGATCTGTATGCCAACACTGTGCTTTCTGGTGGTTCCACCATGTACCC

dot-bracket secondary structure
.........((((...((((((.((((((((.(((((.(((.((........)).))).))))).)))))))).))))))........))))...


SIMILARITIES
miRBase gga-mir-3533: 0.00000000000008

PMRD no hits

microPC no hits
UniProt sp|P53458|ACT5_DIPDE: 0.00000000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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