miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST007242
species: Gasterosteus aculeatus
miRNA family: miR-1612
source: miRNEST

Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAAGGAAAAGGAGCTCGCTGT

miRNA*
ACTGAGCGGTTTGTCCTTCAG

mismatches: 3
bulges: 2

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pre-miRNA
GATGATCCGGACACTGAGCGGTTTGTCCTTCAGGGCTTCCGGGGCGGCGAAGGACTTTGCAACCAGGCGGCTGCACAGCACGTATGATGTGGCCGTGGTG
GGGGGCGGCATCGTCGGCCTGGCGACGGTCAGAGAGCTAATTCTGCGACACCCGTCCCTCAGCTTCGTTCTGCTGGAGAAGGAAAAGGAGCTCGCTGTGC
ACCAGAG


dot-bracket secondary structure
.....((.(((((.(((((..(((.((((((..(((...((((((.(((((....))))).(((..(((((((((((.......)).))))))))))))(
((((((((..((((.((..((((............))))..)).))))...))))))))).))))))....)))...))))))..))).))))).)))..
.)).)).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|A7SMW7|L2HDH_NEMVE: 0.000006

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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