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Species belonging to selected taxon:

Homo sapiens, Pan troglodytes verus



ABOUT THIS RECORD

ID: MNEST028643
species: Homo sapiens
miRNA family: mir-95
source: miRBase, original name: hsa-mir-421 (MI0003685)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCAACAGACATTAATTGGGCGC

miRNA*
CTCATTAAATGTTTGTTGAATGA

mismatches: 3
bulges: 2

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pre-miRNA
GCACATTGTAGGCCTCATTAAATGTTTGTTGAATGAAAAAATGAATCATCAACAGACATTAATTGGGCGCCTGCTCTGTGATCTC

dot-bracket secondary structure
.((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..)))).....


SIMILARITIES
miRBase bta-mir-421: 4e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: cfa-mir-421 from miRBase (MNEST026839)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Microarray, SAGE, cloned

references

[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
[2] Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE, Proc Natl Acad Sci U S A. 103:3687-3692(2006)., "The colorectal microRNAome"




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