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Species belonging to selected taxon:

Homo sapiens, Pan troglodytes verus



ABOUT THIS RECORD

ID: MNEST029358
species: Homo sapiens
miRNA family: mir-3190
source: miRBase, original name: hsa-mir-3190 (MI0014235)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGGAAGGTAGACGGCCAGAGA

miRNA*
TCTGGCCAGCTACGTCCCCACG

mismatches: 5
bulges: 1

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pre-miRNA
CTGGGGTCACCTGTCTGGCCAGCTACGTCCCCACGGCCCTTGTCAGTGTGGAAGGTAGACGGCCAGAGAGGTGACCCCGG

dot-bracket secondary structure
((((((((((((.(((((((..((((.(((.((((((....))).))).)))..))))..))))))).))))))))))))


SIMILARITIES
miRBase hsa-mir-3191: 9e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: hsa-mir-3191 from miRBase (MNEST029359)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"




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