ABOUT THIS RECORDspecies: Ixodes scapularis
miRNA family: mir-iab-4
source: miRBase, original name: isc-mir-iab-4 (MI0016445)
Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTATACTGAGTGTATCCTGA miRNA* CGGTATACCTTCAGTATACGTAAC mismatches: 2 bulges: 2 |
pre-miRNA
GATTCGCGGCGCCTCCCGTTCGTATACTGAGTGTATCCTGAGTGTTTAATTTTCCGGTATACCTTCAGTATACGTAACGGGGGACCCGGAGAATGCGCGG
A
dot-bracket secondary structure
.((((.(((.(.(((((((((((((((((((.((((((.(((.........))).)).)))).))))))))))).)))))))).))))..))))......
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
GATTCGCGGCGCCTCCCGTTCGTATACTGAGTGTATCCTGAGTGTTTAATTTTCCGGTATACCTTCAGTATACGTAACGGGGGACCCGGAGAATGCGCGG
A
dot-bracket secondary structure
.((((.(((.(.(((((((((((((((((((.((((((.(((.........))).)).)))).))))))))))).)))))))).))))..))))......
.
SIMILARITIES| miRBase aga-mir-iab-4: 0.000000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 9e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
