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Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST046128
species: Lactuca perennis
source: microPC, original name: miR398

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCTT

miRNA*
GGAGTGACACTAAGAACACATA

mismatches: 3
bulges: 1

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pre-miRNA
AGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAGTTGTTTGTGAG
ACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCTT


dot-bracket secondary structure
(((.(((((.((.((((((((.((((((((..((...((((..((((((.........((((....)))).......))))))..((((....)))))))
)))...)))))))).....)))))))).))))))).))).



SIMILARITIES
miRBase aqc-MIR398a: 0.0000004

PMRD aqc-miR398a: 0.0000004

microPC miR398: 4e-75
UniProt no hits

RFAM MIR398: 0.0001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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