ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTCCCAATTCCGCCCATTC miRNA* GTCGCAGGGTTTGGAAGGAA mismatches: 4 bulges: 1 |
pre-miRNA
AGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCATGCCATCATGGTCGGGAAACGTGTTCGAACTGAACCAAAATCGCCG
AAGGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTTAGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGA
dot-bracket secondary structure
..(((((...(((((.((.(((((.(((((...((((((.((((..((((.((..((.....(((.((((((..((.((((...(((.......))).))
))...))..))))))))).....)).))..))))...))))))))))...))))).))))).))..)))))...))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCATGCCATCATGGTCGGGAAACGTGTTCGAACTGAACCAAAATCGCCG
AAGGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTTAGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGA
dot-bracket secondary structure
..(((((...(((((.((.(((((.(((((...((((((.((((..((((.((..((.....(((.((((((..((.((((...(((.......))).))
))...))..))))))))).....)).))..))))...))))))))))...))))).))))).))..)))))...))))).
SIMILARITIES| miRBase pvu-MIR482: 0.0001 PMRD pvu-miR482: 0.0001 microPC miR482: 0.0001 | UniProt sp|P93111|HEM11_CUCSA: 0.00000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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