miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sus scrofa, Bos taurus, Canis lupus familiaris, Ovis aries, Ursus americanus, Equus caballus, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST026934
species: Equus caballus
miRNA family: let-7
source: miRBase, original name: eca-let-7f (MI0012860)

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGTATAGTT

miRNA*
CTATACAATCTATTGCCTTCCC

mismatches: 2
bulges: 0

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pre-miRNA
TCGGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGA

dot-bracket secondary structure
((((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))))


SIMILARITIES
miRBase mdo-let-7f-1: 2e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 2e-36

Identical with: cfa-let-7f from miRBase (MNEST026610)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"




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