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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST046849
species:
Allium cepa
miRNA family:
MIR171
source:
PMRD, original name:
ace-miR170c
Taxonomy by NCBI:
Allium cepa
Allium
Allieae
Allioideae
Amaryllidaceae
Asparagales
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC
miRNA*
GGGTTGCCAGCTTCTAGAA
mismatches:
8
bulges:
5
View larger
pre-miRNA
TGATTGAGCCGCGCCAATATC
TCACGCGCAGTGAAA
GGGTTGCCAGCTTCTAGAA
dot-bracket secondary structure
.....((((.(((((....(.
((((.....)))).)
.)).)))..))))......
SIMILARITIES
miRBase
bdi-MIR171a
:
0.0000001
PMRD
ace-miR171a
:
0.00000004
microPC
miR171
:
0.0001
UniProt
no hits
RFAM
MIR171_1: 0.00001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record