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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046853
species: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171c

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
ATCGGTAAAATGGATCAAT

mismatches: 11
bulges: 1

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pre-miRNA
AAATCGGTAAAATGGATCAATGGTGACACCTCTGAGAAGGCCTTGTATGAGCTGAGCTTGAAGACGACGTCCCATGGGTTTGATAACGGATTCGGGTTCA
GACGTGAACCGGTGGCAATGGAGGTGAGGACGTCTTTGAAGATGAAAGCGGATCTTAGGATGGGTTTCAACCCAAGGGAAGAAGGAGGTAACTGCTGATT
GAGCCGCGCCAATATC


dot-bracket secondary structure
.....(((....(.(((((..(((...((((((..((((.((((.((.(((((...(((.(((..(((((((((((((((((....))))))).((((((
....)))))).............))).)))))))))).))).....)))...)).)).)).)).))))..((....)).....)))))).)))..)))))
.).....)))......



SIMILARITIES
miRBase zma-MIR171n: 0.00004

PMRD ace-miR171b: 3e-120

microPC miR171: 0.0007
UniProt sp|O81316|SCL6_ARATH: 0.000000009

RFAM MIR171_1: 0.0008

Identical with: ace-miR170d from PMRD (MNEST046850)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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