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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041744
species: Brachypodium distachyon
miRNA family: MIR166
source: miRBase, original name: bdi-MIR166b (MI0018092)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GCTAGAGAGGGAGCCTTTTTCGTTTTGAGGGGAATGTTGTCTGGCTCGGGGTTCTCTTTATTTCTATGCCTCTCTCTATCCCCCCCTCCTCAATCTCTCT
AGCTTTGATTGGATCGAGAGAAGATCGATCGATCGATCCAAGAAGAGTTCTGAGAAGGGGGATGAAGAGAGTAGACGTATGTGTGTAGATCTCGGACCAG
GCTTCATTCCCCCCAAATACAAGGGCTCCCATGATCTCTGCCTC

dot-bracket secondary structure
((.(((((((((((((((.....((((.((((((((..((((((..(((((((..(..(((.((((...((((((.((((((((.........((((...
((((((..(((((((((..((.......))..)))))))))..))))))..)))).)))))))).)))))))))).))).....)..)))))))..))))
))..)))))))).))))...))))))))))....)))))))...


SIMILARITIES
miRBase osa-MIR166b: 9e-16

PMRD osa-miR166b: 9e-16

microPC miR166: 0.00000000005		UniProt no hits

RFAM mir-166: 0.0000000000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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