ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR168
source: miRBase, original name: bdi-MIR168 (MI0018098)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TGCTCCTCCCCTGCCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCCGCCGGGCCGGATCCCGCCTTGCACCAAGTGAATC
GGAGCCGGCGCAGCGACTTTTTTTTACTTAATTCCT
dot-bracket secondary structure
..............((((((((.(((.(..(((((((((((((..(((((...(((((((((....).)))).)))))))))..)))))))))))))..)
.))).)))))..))).....................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
TGCTCCTCCCCTGCCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCCGCCGGGCCGGATCCCGCCTTGCACCAAGTGAATC
GGAGCCGGCGCAGCGACTTTTTTTTACTTAATTCCT
dot-bracket secondary structure
..............((((((((.(((.(..(((((((((((((..(((((...(((((((((....).)))).)))))))))..)))))))))))))..)
.))).)))))..))).....................
SIMILARITIES| miRBase hvu-MIR168: 3e-45 PMRD sof-miR168a: 6e-34 microPC miR168: 5e-16 | UniProt no hits RFAM MIR168: 1e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
