ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: PMRD, original name: bdi-miR1127
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTACTCCCTCCGTCCGATA miRNA* mismatches: 10 bulges: 100 |
pre-miRNA
TCCACCGGGACAAGTTAGTTAACTACTCCCTCCGTCCGATATTAAGTGGCATTCTATTACATGTATCTAAACGTTTTTTAAAGAGATACATTAGTATTTG
GACCAAACTTGAGTCACT
dot-bracket secondary structure
......((((..((((....))))..)))).......(((.((((((.....((((.(((((((((((...............))))))))..)))..))
))....)))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TCCACCGGGACAAGTTAGTTAACTACTCCCTCCGTCCGATATTAAGTGGCATTCTATTACATGTATCTAAACGTTTTTTAAAGAGATACATTAGTATTTG
GACCAAACTTGAGTCACT
dot-bracket secondary structure
......((((..((((....))))..)))).......(((.((((((.....((((.(((((((((((...............))))))))..)))..))
))....)))))))))...
SIMILARITIES| miRBase bdi-MIR1127: 1e-62 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.00000000003 |
Identical with: bdi-MIR1127 from miRBase (MNEST041810) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
