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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002920
species: Cenchrus ciliaris
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Cenchrus ciliaris Cenchrus Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGAGCTTCTCGAAGATGTCG

miRNA*
 TTGTAGCGGGCGAGCTTGGCG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG

dot-bracket secondary structure
...(((.((((.......((((.(((((((.((((...)))).))))))))))))))).)))..........


SIMILARITIES
miRBase no hits

PMRD osa-miRf10132-akr: 2e-29

microPC no hits		UniProt sp|Q6ZBP3|H2B2_ORYSJ: 0.000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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