ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR811
source: miRBase, original name: osa-MIR811b (MI0005231)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGTTAGATCGAGAAATGGACGT miRNA* GTTCGTTTCTGGATCCAACGGTAG mismatches: 2 bulges: 0 |
pre-miRNA
GGAAACTTGAAAACTACCGTTAGATCGAGAAATGGACGTCCGAGATTCGTCCACGTCACCATGAGTTAAAATTTAACTCGCAGATTCACTCCTGAGTTAA
ACTTTTACTGGGAGTTAAATTTTAACTCATGGTGACGTGGGCGAATCTCGAACGTTCGTTTCTGGATCCAACGGTAGTTTCCAAGTTTCC
dot-bracket secondary structure
(((((((((.(((((((((((.((((.((((((((((((.(((((((((((((((((((((((((((((((((((((((.((((((((....)))))...
.......))).))))))))))))))))))))))))))))))))))))))).)))))))))))).)))).))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
GGAAACTTGAAAACTACCGTTAGATCGAGAAATGGACGTCCGAGATTCGTCCACGTCACCATGAGTTAAAATTTAACTCGCAGATTCACTCCTGAGTTAA
ACTTTTACTGGGAGTTAAATTTTAACTCATGGTGACGTGGGCGAATCTCGAACGTTCGTTTCTGGATCCAACGGTAGTTTCCAAGTTTCC
dot-bracket secondary structure
(((((((((.(((((((((((.((((.((((((((((((.(((((((((((((((((((((((((((((((((((((((.((((((((....)))))...
.......))).))))))))))))))))))))))))))))))))))))))).)))))))))))).)))).))))))))))).)))))))))
SIMILARITIES| miRBase osa-MIR811a: 9e-77 PMRD osa-miR811b: 2e-105 microPC no hits | UniProt no hits RFAM MIR811: 4e-104 |
Identical with: osa-miR811b from PMRD (MNEST049046) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
