ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812f (MI0008271)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGGATGATTAAAGTTGGACACGG miRNA* TGTCTAACTTTGATCGTCCGTTT mismatches: 1 bulges: 0 |
pre-miRNA
CATGAGTTTTGTGTCTAACTTTGATCGTCCGTTTTATTTTAAATTTTTTATGATTAATATTTTTATTGTTATTAGATTATAAAACACAAATAGTACTTTA
TGTGTGACTTATGTTCTTTAGTTTTTTCAAAAAAAATTAAATAAAACGGATGATTAAAGTTGGACACGGAAATTCATGG
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((((((..((((((((.(((.(((((....))))).....(((.(((((..((((.((((....)))
).))))..))))).))).........))).))))))))))))))))))))))))))))))))))))).)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
CATGAGTTTTGTGTCTAACTTTGATCGTCCGTTTTATTTTAAATTTTTTATGATTAATATTTTTATTGTTATTAGATTATAAAACACAAATAGTACTTTA
TGTGTGACTTATGTTCTTTAGTTTTTTCAAAAAAAATTAAATAAAACGGATGATTAAAGTTGGACACGGAAATTCATGG
dot-bracket secondary structure
(((((((((((((((((((((((((((((((((((((((..((((((((.(((.(((((....))))).....(((.(((((..((((.((((....)))
).))))..))))).))).........))).))))))))))))))))))))))))))))))))))))).)))))))))).
SIMILARITIES| miRBase osa-MIR812j: 0.00000000001 PMRD osa-miR812f: 8e-37 microPC miR812: 0.000000002 | UniProt no hits RFAM MIR812: 6e-32 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
