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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002455
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACAGGGATGAGGCAGAGCATG

mismatches: 3
bulges: 0
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pre-miRNA
 TATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATTTCTGTTTGCT
TGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGAGACGGCTGAG
AGCTCAGCTGGTGTCCTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCG

dot-bracket secondary structure
...(((.((((.((((((.(((((((.(((.((((.(((((...(((((..((..((..((((.(((.......((((((.((((((.((((((((((..
..((((((((.........))))))))......))))))))))..((.......))(((.....)))...)))))).)))))))))..)))).((((((.
...)))))))).))..)))))..))))).)))).))).))))))).)))))).))))..))).


SIMILARITIES
miRBase sof-MIR408a: 8e-149

PMRD sof-miR408a: 8e-149

microPC miR408: 0.0002		UniProt no hits

RFAM MIR408: 0.00000000000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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