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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042460
species:
Saccharum officinarum
miRNA family:
MIR168
source:
miRBase, original name:
sof-MIR168b
(
MI0001764
)
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGGCAGATCGGGAC
miRNA*
CCCGCCTTGCACCAAGTGAAT
mismatches:
3
bulges:
1
View larger
pre-miRNA
CCGCCCCGCGCCGTCTGGGC
TCGCTTGGGCAGATCGGGAC
CCGCCGCCCGGCCGACGGGACGGAT
CCCGCCTTGCACCAAGTGAAT
CGGAGCCGGCGCAG
CCA
dot-bracket secondary structure
.......(((((((((((..
((((((((((((..(((((.
(((...((((.....)))).))).)
))))..)))).)))))))).)
))))..))))))..
...
SIMILARITIES
miRBase
sof-MIR168a
:
5e-40
PMRD
sof-miR168b
:
9e-54
microPC
miR168
:
2e-30
UniProt
no hits
RFAM
MIR168: 3e-35
Identical with:
miR168
from microPC (
MNEST046702
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"