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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST054640
species:
Saccharum officinarum
source:
PMRD, original name:
sof-miR171b
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGACCCGCGCCAATATC
miRNA*
GGCAGGAAGGGATCA
mismatches:
10
bulges:
2
View larger
pre-miRNA
TGATTGACCCGCGCCAATATC
TCGCGCGCGCCAGTGGAGTCCCCGGCGTCGGCGCGGCGCACCGCCTCGAGGAGCTCGTCCACCGCCGCCCCTGGCCCGA
GGTCCTCCTCGGCCACGGGGAGCTGGAGCTGCGGGTGCGGGTGCAAGAAGGGCTCGACGGCGGCGGTCTCTTGGCAAGACGGTGGA
GGCAGGAAGGGATC
A
dot-bracket secondary structure
....((((((...((....((
.(((.(((((((..((((.(((((.(((((((.(.((((.((((((((...(((...((((..((..(((((((((.((
((....))))))))).)))).))))))))).)))).)))))))).....).)).))))).))).)).))))))))..).)))))))
....))..))).))
)
SIMILARITIES
miRBase
bdi-MIR171a
:
0.0000000007
PMRD
bdi-miR171a
:
0.0000000007
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record