ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1131
source: miRBase, original name: tae-MIR1131 (MI0006193)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTACCGGTTCGTGGCTAACC miRNA* TTCGTGCCAGGAACCGGTACTAAT mismatches: 2 bulges: 2 |
pre-miRNA
CATTAGTACCGGTTCGTGGCTAACCTTTAGCACCGGTTCGTGCCAGGAACCGGTACTAATGAGGGTGGTGGCAGGATGTTGTCAGTCTGGGCCCCCTCCA
dot-bracket secondary structure
(((((((((((((((.((((.((((.........))))...)))).))))))))))))))).(((.((.(((.((((.......))))..))))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CATTAGTACCGGTTCGTGGCTAACCTTTAGCACCGGTTCGTGCCAGGAACCGGTACTAATGAGGGTGGTGGCAGGATGTTGTCAGTCTGGGCCCCCTCCA
dot-bracket secondary structure
(((((((((((((((.((((.((((.........))))...)))).))))))))))))))).(((.((.(((.((((.......))))..))))).))).
SIMILARITIES| miRBase tae-MIR1117: 0.0000003 PMRD tae-miR1131: 5e-52 microPC miR1131: 4e-25 | UniProt no hits RFAM no hits |
Identical with: tae-miR1131 from PMRD (MNEST054706) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
