ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169c
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTACA mismatches: 2 bulges: 1 |
pre-miRNA
ATGAGGTAGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGTGGCTTAGAACTTAGTCGGCAA
GTCTGTCCTTGGCTACACCTAGTTCTCTTCCTCT
dot-bracket secondary structure
..((((.((((((((((.((.(((((((((((((((((((.((((.(....).))))..(((.((((.......)))).)))............))))))
))).)))))))))).))))).))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[3] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ATGAGGTAGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGTGGCTTAGAACTTAGTCGGCAA
GTCTGTCCTTGGCTACACCTAGTTCTCTTCCTCT
dot-bracket secondary structure
..((((.((((((((((.((.(((((((((((((((((((.((((.(....).))))..(((.((((.......)))).)))............))))))
))).)))))))))).))))).))))))).)))).
SIMILARITIES| miRBase zma-MIR169c: 4e-72 PMRD zma-miR169r: 7e-49 microPC miR169: 2e-43 | UniProt no hits RFAM MIR169_2: 6e-62 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[3] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
