ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169e
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGAGACTGCCTACG miRNA* CAATTCTGATCCTTTGTAAACAAAGGACATAGGCAAGTCATCCTTGGCTATC mismatches: 1 bulges: 2 |
pre-miRNA
GCAATAGGGGCCACTCAGGCTAGCCAAGGAGACTGCCTACGAACCAACACAAAGGTCCACAATTCTGATCCTTTGTAAACAAAGGACATAGGCAAGTCAT
CCTTGGCTATCAGAGGCAGGCCCTTATT
dot-bracket secondary structure
..((((((((((.(((.((.(((((((((((((((((((.(.(((........))).)..........(((((((....)))))))..))))).)))).)
))))))))))).)))...))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCAATAGGGGCCACTCAGGCTAGCCAAGGAGACTGCCTACGAACCAACACAAAGGTCCACAATTCTGATCCTTTGTAAACAAAGGACATAGGCAAGTCAT
CCTTGGCTATCAGAGGCAGGCCCTTATT
dot-bracket secondary structure
..((((((((((.(((.((.(((((((((((((((((((.(.(((........))).)..........(((((((....)))))))..))))).)))).)
))))))))))).)))...))))))))))
SIMILARITIES| miRBase zma-MIR169e: 1e-68 PMRD zma-miR169h: 5e-68 microPC miR169: 0.000000006 | UniProt no hits RFAM MIR169_5: 2e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
