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Species belonging to selected taxon:
Lotus japonicus
ABOUT THIS RECORD
ID:
MNEST001450
species:
Lotus japonicus
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCTCTTCCT
miRNA*
GAGAAGGCCAAGGAGAAGGAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
AACCAAAACAT
CCTCTTCCTCTTCCTCTTCCT
CTTCCTCTTCCCCGCAGGGAGCCTCATCGCACTGCTCCACAACTTCACATCTTCGCTCAATTCGATTG
TTCCTCAATTTCATTGGAAATATATCAACTTCAATTTTTCATTTGATGCCGATACAAGGTGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAG
AAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATC
CCAAAATCGAAGCCAAGAAAAAGAAGGAGGAG
GAGAAGGCCAAGGAGAAGGAG
TTAAATGA
dot-bracket secondary structure
......(((.(
(((.(((((...(((.(((((
(((((((((....((.(((.........((((...((((((((((....((((((((......(((..
((((...........))))....))).((((((.(((((.(((.((((((.......))))..))......))).))))).)))))))))))))).....
.))))))))))(((((..(((...))).((..((((....((...)).)))).))....))))).((........))....))))..))).....((((.
.....))))..)).......))).))))))))
))).)))...))))).)))))
))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9SK74|C3H21_ARATH: 0.0004
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record