ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-33
source: miRBase, original name: lgi-mir-33 (MI0010110)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTGCAT miRNA* GCAATGCATCTGCAGTGCAAAC mismatches: 2 bulges: 0 |
pre-miRNA
CGAACTAAGCAGTTGTGATGGTGCATTGTAGTTGCATTGCATTTGTTATAAATTATGCAATGCATCTGCAGTGCAAACATTACGATTGAAACTATCACCT
A
dot-bracket secondary structure
.((......(((((((((((.((((((((((.((((((((((............)))))))))).))))))))))..)))))))))))......))....
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CGAACTAAGCAGTTGTGATGGTGCATTGTAGTTGCATTGCATTTGTTATAAATTATGCAATGCATCTGCAGTGCAAACATTACGATTGAAACTATCACCT
A
dot-bracket secondary structure
.((......(((((((((((.((((((((((.((((((((((............)))))))))).))))))))))..)))))))))))......))....
.
SIMILARITIES| miRBase cte-mir-33: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 0.00002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
