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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum pennellii
ABOUT THIS RECORD
ID:
MNEST054560
species:
Solanum lycopersicum
miRNA family:
MIR397
source:
PMRD, original name:
sly-miR397
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGTGCAGCGTTGATGAC
miRNA*
CATCAACGCTAAACTCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
CAGAGTACTTAGAAACATGA
TTGAGTGCAGCGTTGATGAC
ATATTTGAGAAGTCCTGCATTTGGGCCTTCCTCATTTTT
CATCAACGCTAAACTCGATC
A
TGTTTTTAATTCTCTG
dot-bracket secondary structure
(((((...((((((((((((
((((((..(((((((((((.
..(..(((((((.(((......))).))).))))..).)
))))))))))..))))))))
)
)))))))))..)))))
SIMILARITIES
miRBase
sly-MIR397
:
2e-61
PMRD
vvi-miR397b
:
0.000006
microPC
miR397
:
0.0003
UniProt
no hits
RFAM
MIR397: 0.000006
Identical with:
sly-MIR397
from miRBase (
MNEST041547
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"