miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002856
species: Bruguiera gymnorhiza
miRNA family: miR396b
source: miRNEST

Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTCAAGAAAGCTGTGGGAAA

miRNA*
TTCCACAGCTTTCTTGAACTT

mismatches: 3
bulges: 0

View larger
pre-miRNA
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAAC
ATGGCAATTCAGGATTT


dot-bracket secondary structure
((((((...(((((((((((((((((.(((((.((...((((...((((.......)))).)))).....)).))))).)))))))))))))))))...)
)))))............



SIMILARITIES
miRBase tcc-MIR396c: 1e-16

PMRD gma-miR396b: 0.0000000001

microPC miR396: 4e-44
UniProt no hits

RFAM MIR396: 0.0000000001
most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046563)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;