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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001279
species: Jatropha curcas
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Jatropha curcas Jatropha Jatropheae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACATCATCATCATCTTCTTCT

miRNA*
 GAGAATGATGATGATGAACAGA

mismatches: 3
bulges: 1
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pre-miRNA
 TTCAATTCTCTACATCATCATCATCTTCTTCTTCTTCTGCTTATAACACTACCCCTCCTTTCACTGTTTCTACTTGTTCTGCCTCTGCTTCTTCCTCTGT
TTCGTCTTTCTCATCTTCTGCATCTTCAAGACTTTTGTTTCCTTTTGCATTTGAAGGATGTAATAATCAACCTATCCAATTTCCTCACCAATTTAAAACA
AACCCTTCTTTTCCTTATTACCGTCCAACAATACAAAATCAACAACAAATGATTTCTTTTAATCAAAGCCAGCAACAGAGCATCACTAATCCTCTGTTTT
TCGCTGGAGAATCTGCATTAGCCCACCACCACCAACAACAGCAACAGCTTTTTCAATATTGGAGTGATACATTGAACTTAAGTCCAAGAGGGAGAATGAT
GATGATGAACAGAGCAGGCCC

dot-bracket secondary structure
.......((((...((((((((((((((((((((((..(((((................((((.(((.((.((((...........(((.......((((
(.............((..(((((((((......((((((...(((((...(((..(((((((((((..................................
..............)))))).)))))..)))..))))).....))))))(((((......))))).(((.((.(((((((.((.....)).))))))).)
).))))))))...))))..))...............)))))....))).............)))))).))).))))..)))))..))))))))))).)))
))))))))..)))).......


SIMILARITIES
miRBase no hits

PMRD ghr-miR414f: 0.0000004

microPC no hits		UniProt sp|Q9M0J3|ERF54_ARATH: 0.0007

RFAM mir-598: 0.000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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