miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001512
species: Manihot esculenta
miRNA family: miR394a-3p
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGTTGGTCTCTCTTTGTAAA

miRNA*
AACAAAGGGTTTCTTACAGAG

mismatches: 5
bulges: 0

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pre-miRNA
AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA


dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).



SIMILARITIES
miRBase ptc-MIR394b: 1e-38

PMRD ptc-miRf10096-akr: 1e-29

microPC miR394: 2e-37
UniProt no hits

RFAM MIR394: 7e-16
most similar mature miRNAs

Identical with: miR394 from microPC (MNEST046238)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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