miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST045833
species: Populus deltoides
source: microPC, original name: miR159

Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCT

miRNA*
 GGCTCCTTGAAGTCCAATAGA

mismatches: 2
bulges: 1
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pre-miRNA
 AGGGCTCCTTGAAGTCCAATAGAGGTTCTTGCTGGGTAGATTAAGCTGCTAAGCTATGGATCCACAGCCCTATCTATCAACTGAAGGATAGGTTTGCGGC
TTGCATATCTCAGGAGCTTTATTGCCTAATGTTAGATCCCTTTTTGGATTGAAGGGAGCTCT

dot-bracket secondary structure
((((((((((..(((((((.(((((.(((.(((((((((...(((((.((.((.((((.(.((.(((.(((((((.((....)).))))))).))).)).
.).)))).)).)).)))))..)))))))..)).)))..))))))))))))..))))))))))


SIMILARITIES
miRBase ptc-MIR159a: 1e-84

PMRD ptc-miR159a: 1e-84

microPC miR159: 9e-89		UniProt no hits

RFAM MIR159: 6e-81

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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