miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051326
species: Populus euphratica
source: PMRD, original name: peu-miR2911

Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCCGGGGGACGGGCTGGGA

miRNA*
 CCAGTCCCGAACCCGTCGG

mismatches: 2
bulges: 3
View larger
pre-miRNA
 TCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCAAGAGCGGGTCGTCGCGTGCCGGCCGGGGGACGGGCTGGGA

dot-bracket secondary structure
((((((.((((..(((((((((((.((..(..((((((..(((((....)))))..))))))..)..)))).))))))..)))..))))))))))


SIMILARITIES
miRBase peu-MIR2911: 5e-49

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

Identical with: peu-MIR2911 from miRBase (MNEST041283)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"



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