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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041380
species: Populus trichocarpa
miRNA family: MIR169_2
source: miRBase, original name: ptc-MIR169z (MI0002276)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGAATGATTTGCCGG

miRNA*
GGCAAGTTGTTCTTGGCTACA

mismatches: 3
bulges: 0

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pre-miRNA
TAGTAGAATGCAGCCAAGAATGATTTGCCGGCGCCGGCCAGCACTTGTTGCAAAGCAACTAAGCAAGGGCTTCAAATGTTTTTGGCACCCCGGCAAGTTG
TTCTTGGCTACA
TTTGGA


dot-bracket secondary structure
.....(((((.(((((((((..(((((((((.(((((((....((((((((...))))).)))....))))............)))...)))))))))..
))))))))).))
)))...



SIMILARITIES
miRBase vvi-MIR169d: 0.00000009

PMRD ptc-miR169z: 1e-62

microPC no hits
UniProt no hits

RFAM MIR169_2: 2e-61

Identical with: ptc-miRf10669-akr from PMRD (MNEST052491)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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