miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051664
species: Populus trichocarpa
miRNA family: MIR169
source: PMRD, original name: ptc-miR169g

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAGGTTGTCCTTGGCTAAA

mismatches: 3
bulges: 0

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pre-miRNA
GAGTAGAATGCAGCCAAGGATGACTTGCCGGCATTTCCTCCTAGGTAGCTAGCAAGCCTTCTATTTGGCATGCCTGTCCGGCAGGTTGTCCTTGGCTAAA
TTTTGT


dot-bracket secondary structure
...((((((..(((((((((..(((((((((((...((.....))......(((.(((........))).))).)).)))))))))..)))))))))..)
))))).



SIMILARITIES
miRBase ptc-MIR169g: 2e-55

PMRD ptc-miR169d: 3e-23

microPC miR169: 0.0000003
UniProt no hits

RFAM MIR169_2: 3e-54

Identical with: ptc-MIR169g from miRBase (MNEST041361)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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