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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST048489
species: Gossypium hirsutum
miRNA family: MIR156
source: PMRD, original name: ghr-miR156b

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACCCTCTATCTGTCATC

mismatches: 1
bulges: 1

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pre-miRNA
GGTGACAGAAGAGAGTGAGCACACAGGGTACTTTCTTGCATGCTTGAGCCTTTCATGCTTGAAGCTCTGCGTGCTCACCCTCTATCTGTCATCCACTTTT
CTCTCTCTCTCTC


dot-bracket secondary structure
(((((((((((((.((((((((.((((((...(((..(((((...........)))))..))))))))).)))))))).)))).))))))))).......
.............



SIMILARITIES
miRBase ghr-MIR156b: 2e-51

PMRD ghr-miR156a: 1e-50

microPC miR156: 0.000000000006
UniProt no hits

RFAM mir-156: 1e-16

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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