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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000791
species: Gossypium hirsutum
miRNA family: MIR390
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC

miRNA*
CGCTATCCATCCTGAGTTTCA

mismatches: 2
bulges: 0

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pre-miRNA
TCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCG
CTATCCATCCTGAGTTTCA
TCGGTTCTTCTTGCTTGC


dot-bracket secondary structure
...((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).)))
)))))).)))))))))).)
).)))))))))))))...



SIMILARITIES
miRBase ghr-MIR390b: 6e-71

PMRD ghr-miR390b: 6e-71

microPC miR390: 5e-50
UniProt no hits

RFAM MIR390: 0.000000000000002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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