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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST041110
species: Theobroma cacao
miRNA family: MIR169_1
source: miRBase, original name: tcc-MIR169i (MI0017483)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGAGTTGCCTG

miRNA*
GGCATTCACCTTGGCTAACT

mismatches: 0
bulges: 3

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pre-miRNA
AAGATAAGAGTTCTGTTTGGTAGCCAAGGATGAGTTGCCTGCTCCTTCCAAGAGGTTTCAAATCTTGTTGGGTTGCCAGGCATTCACCTTGGCTAACTTG
ACTGGCTCTTTTCTT


dot-bracket secondary structure
((((.(((((((..(((.(((((((((((.(((((.((((((.(((..(((((.........)))))..)))..).)))))))))))))))))).))).)
)).))))))).))))



SIMILARITIES
miRBase ptc-MIR169m: 0.000000006

PMRD ptc-miRf10904-akr: 0.000000006

microPC no hits
UniProt no hits

RFAM MIR169_5: 0.00000003

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"




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