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Species belonging to selected taxon:
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST000813
species:
Gossypium raimondii
miRNA family:
MIR3476
source:
miRNEST
Taxonomy by NCBI:
Gossypium raimondii
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAACTGGGTTTGTTGGCTGC
miRNA*
AGCCAACAACATCAGTTCTAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGATGCAGTTCAGTATTCCAGTATCTTGATT
TGAACTGGGTTTGTTGGCTGC
TGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAAACACT
TTTCAGG
AGCCAACAACATCAGTTCTAA
CCAGGACTGGGCTGAGATTTACAAGCTC
dot-bracket secondary structure
........((((((...((((..(((((.((
.(((((((..(((((((((.(
(((((((((((...))))))))..........................
..)))).
)))))))))..))))))).))
.)))))))))))))))............
SIMILARITIES
miRBase
ghr-MIR3476
:
6e-56
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record