miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002735
species: Theobroma cacao
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

View larger
pre-miRNA
GATTCAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGCTGCTCCTTAATAGTGGATTGGATTGGATTTAGGCCAGATGGC
GGGCCGTGACTGGAGGAGGCACGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAGGGGTTG


dot-bracket secondary structure
(((((..((((((.((((((((.(((((.((((((((((.(((((.((((((...((((..(((((..(((((((((......))))).((((.......
.))))...)))))))))))))..)))))).))))).)))))))))).))))).)))))))))))))).))))).



SIMILARITIES
miRBase tcc-MIR168: 1e-91

PMRD rco-miR168: 3e-21

microPC miR168: 0.0000000001
UniProt no hits

RFAM MIR168: 5e-20
most similar mature miRNAs

Identical with: tcc-MIR168 from miRBase (MNEST041101)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;