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Species belonging to selected taxon:
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041109
species:
Theobroma cacao
miRNA family:
MIR169
source:
miRBase, original name:
tcc-MIR169h
(
MI0017482
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTG
miRNA*
GGCAGTCACCTAGGCTAATC
mismatches:
1
bulges:
3
View larger
pre-miRNA
AGGTAAAGAGTCATGCTTGG
TAGCCAAGGATGACTTGCCTG
CACCTTTCCCCAAGGATTCAAGTAAATGGCTAAGAAACCTGAAACTCCTTTCAGGTTGC
CA
GGCAGTCACCTAGGCTAATC
TAGCAGGTTCTTTTCCC
dot-bracket secondary structure
.((.(((((..(.((((.((
(((((.(((.(((((.(((((
..((((.....))))....................(((((((((....)))))))))..
))
))))))))))).)))).)))
.)))))..))))).)).
SIMILARITIES
miRBase
ghb-MIR169a
:
0.0000000000005
PMRD
ghb-miR169a
:
0.0000000000005
microPC
miR169
:
0.00003
UniProt
no hits
RFAM
MIR169_5: 0.0000000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"