ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: let-7
source: miRBase, original name: rno-mir-3596d (MI0015418)
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTATACAATCTACTACCTCA miRNA* AGGCAATAGATTGTATAGTT mismatches: 5 bulges: 0 |
pre-miRNA
ACTCCTCAGGGAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAAAATCACTACCCCACAACTATACAATCTACTACCTCACTCTGATAGAG
dot-bracket secondary structure
.(((.((((((.(((...((((((((((((((............(((((.......)))))...))))))))))))))...)))..))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
ACTCCTCAGGGAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAAAATCACTACCCCACAACTATACAATCTACTACCTCACTCTGATAGAG
dot-bracket secondary structure
.(((.((((((.(((...((((((((((((((............(((((.......)))))...))))))))))))))...)))..))))))..)))
SIMILARITIES| miRBase mmu-let-7f-1: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 8e-36 |
Identical with: mmu-let-7f-1 from miRBase (MNEST031759) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLiD
references
[1] Linsen SE, de Wit E, de Bruijn E, Cuppen E, BMC Genomics. 11:249(2010)., "Small RNA expression and strain specificity in the rat"
