miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Litopenaeus vannamei, Lepeophtheirus salmonis, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Daphnia pulex, Nasonia vitripennis, Drosophila simulans, Petrolisthes cinctipes, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Penaeus monodon, Drosophila sechellia, Drosophila auraria, Artemia franciscana, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Caligus rogercresseyi, Nasonia giraulti, Homarus americanus, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Eriocheir sinensis, Papilio xuthus, Onychiurus arcticus, Rhodnius prolixus, Carcinus maenas, Polypedilum vanderplanki, Ostrinia nubilalis, Lernaeocera branchialis, Caligus clemensi, Laupala kohalensis, Frankliniella occidentalis, Daphnia magna, Gammarus pulex, Trichoplusia ni, Calanus finmarchicus, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Callinectes sapidus, Fenneropenaeus chinensis, Apis mellifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST036242
species: Drosophila grimshawi
miRNA family: mir-4
source: miRBase, original name: dgr-mir-4-1 (MI0009159)

Taxonomy by NCBI:
Drosophila grimshawi grimshawi subgroup grimshawi group grimshawi clade picture wing clade Hawaiian Drosophila Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGACAACCATTGA

miRNA*
TTTGGTCGTCCAGCCTTAGGTGA

mismatches: 7
bulges: 2

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pre-miRNA
TTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGG

dot-bracket secondary structure
(..((((.(..(((..((((.(((.(((.....((((((.....))))))...))).))).))))..)))..).))))..)


SIMILARITIES
miRBase dgr-mir-4-2: 9e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: dgr-mir-4-2 from miRBase (MNEST036243)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"




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