miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST045074
species: Manihot esculenta
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTAAAGTCCAATA

mismatches: 2
bulges: 0

View larger
pre-miRNA
TGGAGCTCCTTAAAGTCCAATAGAGGATCTTGCAGGGTAGATTGAGCTGCTGAGCTATGGATACCACAGCCCTATCCCATAATAAAAGGGAGTTCTTTTT
TTCAAGTCTTCTTGGATAGGCTTGTGGCTTGCATATCTCTGGAGCTTCATTACCTTATTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCTA


dot-bracket secondary structure
(((((((((((..(((((((..((((((((.(((((((((...(((((.(.(((.((((.(..((((((.(((((((.........((((((..(((...
...))).))))))))))))).))))))..).)))).))).).)))))..)))))).....))).))))))))..)))))))..)))))))))))



SIMILARITIES
miRBase rco-MIR159: 3e-27

PMRD vvi-miR159c: 8e-22

microPC miR159: 3e-95
UniProt no hits

RFAM MIR159: 6e-26

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;