miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040730
species: Medicago truncatula
miRNA family: MIR398
source: miRBase, original name: mtr-MIR398c (MI0005611)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCTG

miRNA*
GGGCCGACCCGAGACCACATG

mismatches: 3
bulges: 0

View larger
pre-miRNA
TTCCACAGGGCCGACCCGAGACCACATGAAGTTATCATATGTGTCTAAGCTACACATCTCGTGTGTTCTCAGGTCGCCCCTGCTGAA

dot-bracket secondary structure
...(((((((.(((((.((((.(((((((.(.......((((((.......)))))))))))))).)))).))))).))))).))..


SIMILARITIES
miRBase mtr-MIR398b: 0.000000000000001

PMRD vvi-miR398c: 0.0000003

microPC miR398: 0.000001
UniProt no hits

RFAM MIR398: 0.00000000000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Bonnet E, Unpublished (2007).,




Liczniki na strone;