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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040771
species:
Medicago truncatula
miRNA family:
MIR2111
source:
miRBase, original name:
mtr-MIR2111n
(
MI0011842
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAATCTGCATCCTGAGGTTTA
miRNA*
AGCCTTGGAGTGCAGATTATC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TAACAGCTGCGTAATTGTATCTA
AGCCTTGGAGTGCAGATTATC
TCTTCCTTAACCCCAATAGGCGTAGAACTATGAAATTGTTGGGTTTCAAATGTGAG
TGATTAAGTCTCACATCAATTTGAAATGAAGAAAATGTTTGATATAAAGTGATGCGACACATATACTTAATATCTTAAGGAATTGGGTGAAGATATGGTG
TCAAAGTCTCTTAGAGATCCTCGATGTATAGCCTATTACCGCTCCCGCCGCTCCCAAGACTACACAACACATATCAACATGACGGTTTCCATTTTCCTTT
AGAGCAATAAGTCTTCTTGATGGAGTCGGTATAATTATTGGGTAAGGATTAGA
TAATCTGCATCCTGAGGTTTA
TAGCAATATTGTAGTTGTT
dot-bracket secondary structure
.((((((((((..(((((...((
(((((..(..(((((((((((
(..((((((..((((((((..((((..(((((..((((..(((((((..(((((((
.........)))))))..............................(((.(((..((((((((((((((((.((....)).)))))))....)))).)))
))...))).))).))))))).)))).))))).))))(((((((((....((((..(((...........(((......)))..((...))......))).
.))))..((((....))))..)))).)))))...))))))))))))))..)))
)))))))))..)..)))))))
..)))))..))))))))))
SIMILARITIES
miRBase
mtr-MIR2111l
:
7e-30
PMRD
ptc-miRf11953-akr
:
0.0003
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"